> Monitor end-to-end web transactions and take corrective actions now > APM + Mobile APM + RUM: Monitor 3 App instances at just $35/Month > Site24x7 APM Insight: Get Deep Visibility into Application Performance The append function is not working in my PyMol. > In order to superimpose two protein sequences, I am trying to append a pdb file to an existing protein sequence, which I have already opened in PyMol. > On Thu, at 10:47 PM, Mohsen Chitsaz wrote: > if you want to superimpose structures, have a look at the align command: > SENT: Wednesday, 24 February 2016 11:17 PM
Pymol tutorial 10 answer how to#
How to tell Pymol to align a specific chain or part of a protein, in my case chain A of 4mt1, to a specific chain or part of another protein, in my case chain B of 3aob? I want to align chain A of 4mt1 to chain B of 3aob. Signup Now!Īrchives: APM Insight: Get Deep Visibility into Application Performance Troubleshoot faster and improve end-user experience. Monitor end-to-end web transactions and take corrective actions now
Site24x7 APM Insight: Get Deep Visibility into Application PerformanceĪPM + Mobile APM + RUM: Monitor 3 App instances at just $35/Month In order to superimpose two protein sequences, I am trying to append a pdb file to an existing protein sequence, which I have already opened in PyMol. On Thu, at 10:47 PM, Mohsen Chitsaz > wrote: If you want to superimpose structures, have a look at the align command: Sent: Wednesday, 24 February 2016 11:17 PM Signup Now!įrom: Thursday, 25 February 2016 10:24 PM Site24x7 APM Insight: Get Deep Visibility into Application Performance APM + Mobile APM + RUM: Monitor 3 App instances at just $35/Month Monitor end-to-end web transactions and take corrective actions now Troubleshoot faster and improve end-user experience. I am just wondering how can we do this? Is there any command line? I would like to know the XYZ information of a specific atom.
To: how to get an atom coordinates information There are other ways to do this but this will get you going more quickly. There is no command line tool for that purpose per se, however you can use the iterate command for that purpose. > stop working, 'select resi 10' results in 'selection "sele" defined > However if I load the same structure using fetch command selections
> 'select resi 10' it works fine, producing something like 'selection > If I load my own pdb file and issue a simple select command like > selectors like 'resn' and 'name' simply silently failed. > case-sensitive and it's not actually mentioned anywhere on the wiki, so > For different problem: For some reason it turns out that 'select' is > numbered 10, why my own file was already repaired and had it fine. > For false alarm:Structure retrieved by 'fetch' simply lacked residue > Sorry, it's actually part false alarm and part a completely different Note: The wiki page mentions 1.8.0.0 (official release), but the SVN repo had the change since 1.7.7.1 ( ).
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